The second quarter of 2012 proved to be better than the troubled first quarter for Allscripts. The EHR company reported Q2 bookings of $194.1 million, revenue of $370 million and cash flow from operations at $58.8 million, better than what financial analysts expected.

Profits are down from $15.9 million a year ago, to $8 million in Q2 this year.
  
Many of the analysts on the Q2 conference call Aug. 8, congratulated CEO Glen Tullman on exceeding analyst estimates.
  
Sean Wieland, senior analyst at Piper Jaffray, concluded in a brief he issued Aug. 9 that the Q2 results showed things were not getting worse, but that Allscripts had much left to do to recover.

“Expectations of flat sequential bookings and revenue for the rest of the year and back-end loaded EPS guidance leaves us wanting more,” Wieland wrote.

Tullman, for his part, delivered an upbeat message – one with a theme of focus and execution, noting that the second quarter results were solid and demonstrated improvement in several key business metrics.

[See also: Lawsuit seeks Allscripts CEO's removal .]

“We are aggressively focused on executing our business plan and delivering on our client commitments,” said Tullman. “We remain on schedule to release important new solution enhancements during the fourth quarter of 2012.  Allscripts remains well-positioned in a robust market with a comprehensive portfolio spanning the ambulatory, acute and post-acute care delivery environments.”

[See also: Customers have high expectations for Allscripts.]
  
Analysts point to Cerner, Quality Systems and athenahealth as key competitors for Allscripts in what is a highly competitive market.
  
Interim Chief Financial Office David Morgan elaborated on the Q2 numbers during the conference call. Allscripts' outlook suffered during recent turmoil when its CFO left for another post – a move that company executives said was unrelated to the firing of the company’s board chairman at the time. Tullman said during the conference call that the search for a new CFO was under way both internally and externally.

Q2 numbers:

• Bookings of $194.1 million.  This compares with bookings of $244.6 million in the second quarter of 2011 and $194.6 million in the first quarter of 2012.
• GAAP revenue of $370.0 million and non-GAAP revenue of $370.7 million.  This compares with GAAP and non-GAAP revenue of $356.8 and $363.5 million, respectively, in the second quarter of 2011.
• GAAP gross profit for the three months ended June 30, 2012, was $157.5 million. Non-GAAP gross profit was $158.2 million for the three months ended June 30, 2012, or 42.7 percent of total non-GAAP revenue.  This compares with $174.5 million or 48.0 percent of non-GAAP revenue for the prior year.
• GAAP operating income for the three months ended June 30, 2012, was $17.7 million.  Non-GAAP operating income was $51.0 million for three months ended June 30, 2012, or 13.8 percent of total non-GAAP revenue.  This compares with $74.5 million or 20.5 percent of non-GAAP revenue for the prior year.
• GAAP net income of $8.0 million and GAAP diluted earnings per share of $0.04.  This compares with $15.9 million and $0.08, respectively, in the second quarter of 2011.
• Non-GAAP net income of $29.3 million and non-GAAP diluted earnings per share of $0.16.  This compares with $42.5 million and $0.22, respectively, in the second quarter of 2011.
• $58.8 million in cash flow from operations.  This compares with $52.3 million in the second quarter of 2011.
• Repurchased approximately 21 million shares of common stock during the three months ended June 30, 2012, for approximately $225 million.